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bcl2fastq
NextSeq specific bcl2fastq2 wrapper.covviz
Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadatafastq-multx
Demultiplexes a fastq.umitools
Tools to handle reads sequenced with unique molecular identifiers (UMIs).idplot
compare sequences to a shared root reference sequence.smoove-nf
Nextflow implementation of the smoove workflow and other tools for SV calling and QCfastq-join
Squared distance for anchored alignment joiner of ea-utils.freebayes-nf
a better freebayes-parallelfqc
Extensible quality control dashboard built around FASTQ assessment.covdist
simple coverage distribution profile of aligned samples. useful for sequencing center feedback and topoffs.seqanno
Retrieves read counts originating at a given genomic sequence and allows further characterization.polya
scripts associated with identifying polya cleavage preferenceblastdbget
Download Blast databases from ftp.ncbi.nlm.nih.gov/blast/db, validate, and extract.repertoire
Pipelines for assembling and assessing T and B cell receptor repertoires.relatively
📊 Plotly abundance figure with absolute and relative abundances across a hierarchybinder
mybinder.org - open testing.gdemux
demultiplex into groups (subsets) rather than individual sample files, by barcodeLove Open Source and this site? Check out how you can help us