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bcl2fastq
NextSeq specific bcl2fastq2 wrapper.covviz
Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadatafastq-multx
Demultiplexes a fastq.umitools
Tools to handle reads sequenced with unique molecular identifiers (UMIs).idplot
compare sequences to a shared root reference sequence.smoove-nf
Nextflow implementation of the smoove workflow and other tools for SV calling and QCfastq-join
Squared distance for anchored alignment joiner of ea-utils.freebayes-nf
a better freebayes-parallelfqc
Extensible quality control dashboard built around FASTQ assessment.covdist
simple coverage distribution profile of aligned samples. useful for sequencing center feedback and topoffs.hundo
Amplicon processing protocolsseqanno
Retrieves read counts originating at a given genomic sequence and allows further characterization.blastdbget
Download Blast databases from ftp.ncbi.nlm.nih.gov/blast/db, validate, and extract.repertoire
Pipelines for assembling and assessing T and B cell receptor repertoires.relatively
π Plotly abundance figure with absolute and relative abundances across a hierarchybinder
mybinder.org - open testing.gdemux
demultiplex into groups (subsets) rather than individual sample files, by barcodeLove Open Source and this site? Check out how you can help us