QI2lab/napari-spot-detection

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Python
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GNU General Publi...
Created almost 2 years ago
Updated 9 months ago

QI2lab/napari-spot-detection

QI2lab

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Detect diffraction limited spots in 2D and 3D, in standard or skewed microscopy images.

mcSIM

Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

OPM

Control, reconstruction, and analysis code for oblique plane microscopy.

I2K2022-SIM

I2K 2022 mcSIM tutorial

Jupyter Notebook

localize-psf

Code for localizing diffraction limited fluorescent objects and fitting the results to various different point-spread function (PSF) models.

merfish3d-analysis

3D MERFISH data processing

SPIM_model

Jupyter Notebook

napari-mcsim

Napari plugin automating structured illumination microscopy (SIM) reconstruction and diagnostics from the mcSIM package