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QI2 lab (@QI2lab)

QI2lab

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Registered almost 5 years ago
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Location 🇺🇸 United States
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Python
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mcSIM

Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

OPM

Control, reconstruction, and analysis code for oblique plane microscopy.

I2K2022-SIM

I2K 2022 mcSIM tutorial

Jupyter Notebook

localize-psf

Code for localizing diffraction limited fluorescent objects and fitting the results to various different point-spread function (PSF) models.

napari-spot-detection

Detect diffraction limited spots in 2D and 3D, in standard or skewed microscopy images.

napari-mcsim

Napari plugin automating structured illumination microscopy (SIM) reconstruction and diagnostics from the mcSIM package