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arnie
Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.KaggleOpenVaccine
draw_rna
Draw RNA secondary structures in python.RiboGraphViz
Visualize global properties of large RNAs using GraphViz force-directed layout.openvaccine-CE-analysis
Data and analysis of capillary electrophoresis data measuring mRNA degradation rates for Combinatorial Optimization of mRNA paper, Das and Barna labs (2020).FARFAR2-SARS-CoV-2
Models of SARS-CoV-2 genomic elements generated by FARFAR2rna_benchmark
Python scripts & reference data for Rosetta RNA modeling benchmarksServer_RMDB
RNA Mapping Databasezetafold
Sandbox for secondary structure modelingCASP15_RNA_EM
SARSCoV2_Secstruct_Cons
FARFAR2-Apo-Riboswitch
Models of apo riboswitches generated by FARFAR2Server_Primerize
Primerize PCR Assembly Design ServerFARFAR2_modeling_examples
Modeling examples for FARFAR2CDSfold_SU
Update CDSfold to modern C++ while maintaining performanceubr
Ultraplex-Bowtie2-RNAframework pipeline for analysis of SHAPE-MaP/DMS-MaP big library runscasp-rna
Pipeline used to assess RNA in CASP15smiFISH-Probes
RNA-deg-rates
Degradation rates for RNA molecules compiled during Stanford OpenVaccine research, 2020-20213-UTR-Quantification
FARFAR2-Puzzles-Clusters
Cluster centers for the 21 benchmark cases in FARFAR2-PuzzlesCoronavirus_SL5_3D
Accompanying the publication: Tertiary folds of the SL5 RNA from the 5’ proximal region of SARS-CoV-2 and related coronavirusesLove Open Source and this site? Check out how you can help us