DasLab/openvaccine-CE-analysis DasLab/openvaccine-CE-analysis

  • This repository has been archived on 01/Jul/2024
  • Stars
    star
    10
  • Rank 1,807,489 (Top 36 %)
  • Language
    Jupyter Notebook
  • License
    MIT License
  • Created about 3 years ago
  • Updated almost 3 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
DasLab/openvaccine-CE-analysis
github

DasLab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Data and analysis of capillary electrophoresis data measuring mRNA degradation rates for Combinatorial Optimization of mRNA paper, Das and Barna labs (2020).

More Repositories

1

arnie

Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
Python
96
star
2

KaggleOpenVaccine

Jupyter Notebook
53
star
3

draw_rna

Draw RNA secondary structures in python.
Jupyter Notebook
36
star
4

RiboGraphViz

Visualize global properties of large RNAs using GraphViz force-directed layout.
Jupyter Notebook
20
star
5

FARFAR2-SARS-CoV-2

Models of SARS-CoV-2 genomic elements generated by FARFAR2
8
star
6

rna_benchmark

Python scripts & reference data for Rosetta RNA modeling benchmarks
Scala
7
star
7

Server_RMDB

RNA Mapping Database
JavaScript
4
star
8

zetafold

Sandbox for secondary structure modeling
Python
3
star
9

CASP15_RNA_EM

Jupyter Notebook
3
star
10

SARSCoV2_Secstruct_Cons

Python
3
star
11

FARFAR2-Apo-Riboswitch

Models of apo riboswitches generated by FARFAR2
3
star
12

Server_Primerize

Primerize PCR Assembly Design Server
HTML
2
star
13

FARFAR2_modeling_examples

Modeling examples for FARFAR2
Scala
2
star
14

CDSfold_SU

Update CDSfold to modern C++ while maintaining performance
C++
2
star
15

ubr

Ultraplex-Bowtie2-RNAframework pipeline for analysis of SHAPE-MaP/DMS-MaP big library runs
MATLAB
2
star
16

casp-rna

Pipeline used to assess RNA in CASP15
Jupyter Notebook
2
star
17

smiFISH-Probes

Jupyter Notebook
1
star
18

RNA-deg-rates

Degradation rates for RNA molecules compiled during Stanford OpenVaccine research, 2020-2021
MATLAB
1
star
19

3-UTR-Quantification

Jupyter Notebook
1
star
20

FARFAR2-Puzzles-Clusters

Cluster centers for the 21 benchmark cases in FARFAR2-Puzzles
1
star
21

Coronavirus_SL5_3D

Accompanying the publication: Tertiary folds of the SL5 RNA from the 5’ proximal region of SARS-CoV-2 and related coronaviruses
Jupyter Notebook
1
star
22

Server_Daslab

Das Lab Website
HTML
1
star