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ContextLab/hypertools-paper-notebooks

Stars
147
Rank 251,295 (Top 5 %)
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Jupyter Notebook
License
MIT License
Created almost 8 years ago
Updated about 6 years ago

ContextLab/hypertools-paper-notebooks

ContextLab

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Supporting notebooks and data from hypertools paper

hypertools-paper-notebooks

This repo contains Jupyter notebooks to accompany the HyperTools paper and software.

To use them, install HyperTools (pip install hypertools) and then clone this repo and open with Jupyter.

Note: These notebooks have been tested with Hypertools version 0.4.0 and may not work with older versions. To upgrade: pip install --upgrade hypertools

hypertools

A Python toolbox for gaining geometric insights into high-dimensional data

human-memory

Course materials for Dartmouth course: Human Memory (PSYC 51.09)

storytelling-with-data

Course materials for Dartmouth Course: Storytelling with Data (PSYC 81.09).

Jupyter Notebook

cs-for-psych

Course materials for PSYC 132: Introduction to Programming for Psychological Scientists

Jupyter Notebook

computational-neuroscience

Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction to programming in MATLAB, single-neuron models, ion channel models, basic neural networks, and neural decoding.

davos

Import packages in Python, even if they aren't installed!

timecorr

Estimate dynamic high-order correlations in multivariate timeseries data

Jupyter Notebook

supereeg

Infer activity throughout the brain from a small(ish) number of electrodes using Gaussian process regression

sherlock-topic-model-paper

Data and code for the paper "Geometric models reveal behavioural and neural signatures of transforming naturalistic experiences into episodic memories" by Andrew C. Heusser, Paxton C. Fitzpatrick, and Jeremy R. Manning

Jupyter Notebook

chatify

Add ipython magic commands to Jupyter notebooks that provide LLM-driven enhancements

quail

A python toolbox for analyzing and plotting free recall data

lab-manual

Lab manual for the Contextual Dynamics Laboratory at Dartmouth College

experimental-psychology

Course materials for PSYC 11: Laboratory in Psychological Science, Dartmouth College (Instructor: Jeremy Manning)

abstract2paper

Auto-generate an entire paper from a prompt or abstract using NLP

Jupyter Notebook

CDL-tutorials

Repo containing useful tutorials on different topics, methods, software tools, and packages used by the CDL

Jupyter Notebook

timecorr-paper

Paper and code for High-level cognition during story listening is reflected in high-order dynamic correlations in neural activity patterns

Jupyter Notebook

brainfit-paper

Paper, code, and data related to the paper "Fitness tracking reveals task-specific associations between memory, mental health, and exercise" by Jeremy R. Manning, Gina M. Notaro, Esme Chen, and Paxton C. Fitzpatrick

Jupyter Notebook

data-wrangler

Wrangle messy numerical, image, and text data into consistent well-organized formats

attention-memory-task

An experiment used to explore interactions between covert attention and recognition memory

Jupyter Notebook

Dartmouth-OpenBCI-Hackathon

autoFR

Template for a free recall experiment with automatic audio transcription

supereeg_paper

Jupyter Notebook

CDL-bibliography

Bibtex file shared by the Contextual Dynamics Lab at Dartmouth College

brain-plots

Quickly and easily create 2d and 3d plots of fMRI data (using MATLAB).

efficient-learning-khan

Experiment, data, and analysis code for "Text embedding models yield high-resolution insights into conceptual knowledge from short multiple-choice quizzes" by Paxton C. Fitzpatrick, Andrew C. Heusser, and Jeremy R. Manning

mental-time-travel-paper

Code for exploring how we distribute our thoughts over time when we remember, using data from a naturalistic memory experiment.

Jupyter Notebook

neurosim

Create synthetic brain data

hypertools-matlab

A set of generic and widely useful tools for manipulating and visualizing high-dimensional data.

cluster-tools-dartmouth

Template scripts for getting jobs to run on Dartmouth's "Discovery" cluster

CDL-docker-stacks

Lightweight, customizable, hierarchically built docker images for common neuro/data science applications. Pre-built images available on Docker Hub

FRFR-analyses

Binder for Feature-rich Free Recall analyses

Jupyter Notebook

hypertools-paper

repo for the HyperTools paper

chuck-closeify

Automatically create artworks in Chuck Close's iconic style from a reference JPG image

latex-base

Template repository for latex documents produced by the Contextual Dynamics Lab

Jupyter Notebook

storytelling-with-data-binary-converter

Storytelling with Data Assignment 3: Binary converter

Jupyter Notebook

psyc32-eliza

ELIZA chatbot assignment for PSYC 32

Jupyter Notebook

pupil-memory-analysis

Jupyter Notebook

brainfit-task

a package for acquiring fitness tracker (Fitbit) and cognitive task (JsPsych) data on the Amazon Mechanical Turk platform

tubeTopics

Creates a topic model from a YouTube audio track using Latent Dirichlet Allocation (LDA) and google speech-to-text

pca_paper

Jupyter Notebook

CDL-algonauts-2021

Contextual Dynamics Lab (Dartmouth) code related to the CCN Algonauts 2021 challenge

AttentionGroupHackathon

Hackathon for the attention group

prediction-retrodiction-paper

Jupyter Notebook

DIRSA

Dynamic Inter-subject Representational Similarity Analysis

Jupyter Notebook

hypertools-examples-data

Contains example datasets for HyperTools package

sequences

Define a "repeatability" index that says, for an arbitrary time series, how much "fractal structure" there is in the signal.

magellan_data

Data from Manning et al. (2014) in an updated and convenient format

hopfield-demo

Demo hopfield network code

quail-example-notebooks

Interactive tutorials for quail

Jupyter Notebook

thought-trajectories-demo

Demo of hypertools-derived thought trajectories

Jupyter Notebook

llm-course

Dartmouth undergraduate course on large language models and chatbots