Discover ContextLab/CDL-tutorials Open Source project

Course materials for Dartmouth course: Human Memory (PSYC 51.09)

1,813

human-memory

Supporting notebooks and data from hypertools paper

243

hypertools-paper-notebooks

Course materials for Dartmouth Course: Storytelling with Data (PSYC 81.09).

147

storytelling-with-data

Course materials for PSYC 132: Introduction to Programming for Psychological Scientists

cs-for-psych

Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction to programming in MATLAB, single-neuron models, ion channel models, basic neural networks, and neural decoding.

computational-neuroscience

Import packages in Python, even if they aren't installed!

davos

Estimate dynamic high-order correlations in multivariate timeseries data

timecorr

Infer activity throughout the brain from a small(ish) number of electrodes using Gaussian process regression

supereeg

Data and code for the paper "Geometric models reveal behavioural and neural signatures of transforming naturalistic experiences into episodic memories" by Andrew C. Heusser, Paxton C. Fitzpatrick, and Jeremy R. Manning

sherlock-topic-model-paper

Add ipython magic commands to Jupyter notebooks that provide LLM-driven enhancements

chatify

A python toolbox for analyzing and plotting free recall data

quail

Lab manual for the Contextual Dynamics Laboratory at Dartmouth College

lab-manual

Course materials for PSYC 11: Laboratory in Psychological Science, Dartmouth College (Instructor: Jeremy Manning)

experimental-psychology

abstract2paper

Auto-generate an entire paper from a prompt or abstract using NLP

Paper and code for High-level cognition during story listening is reflected in high-order dynamic correlations in neural activity patterns

timecorr-paper

Paper, code, and data related to the paper "Fitness tracking reveals task-specific associations between memory, mental health, and exercise" by Jeremy R. Manning, Gina M. Notaro, Esme Chen, and Paxton C. Fitzpatrick

brainfit-paper

Wrangle messy numerical, image, and text data into consistent well-organized formats

data-wrangler

An experiment used to explore interactions between covert attention and recognition memory

attention-memory-task

Dartmouth-OpenBCI-Hackathon

Open BCI demo

Template for a free recall experiment with automatic audio transcription

autoFR

JavaScript

supereeg_paper

paper analyses

Bibtex file shared by the Contextual Dynamics Lab at Dartmouth College

CDL-bibliography

Quickly and easily create 2d and 3d plots of fMRI data (using MATLAB).

brain-plots

Experiment, data, and analysis code for "Text embedding models yield high-resolution insights into conceptual knowledge from short multiple-choice quizzes" by Paxton C. Fitzpatrick, Andrew C. Heusser, and Jeremy R. Manning

efficient-learning-khan

Code for exploring how we distribute our thoughts over time when we remember, using data from a naturalistic memory experiment.

mental-time-travel-paper

Create synthetic brain data

neurosim

A set of generic and widely useful tools for manipulating and visualizing high-dimensional data.

hypertools-matlab

Template scripts for getting jobs to run on Dartmouth's "Discovery" cluster

cluster-tools-dartmouth

Lightweight, customizable, hierarchically built docker images for common neuro/data science applications. Pre-built images available on Docker Hub

CDL-docker-stacks

Binder for Feature-rich Free Recall analyses

FRFR-analyses

repo for the HyperTools paper

hypertools-paper

Automatically create artworks in Chuck Close's iconic style from a reference JPG image

chuck-closeify

Template repository for latex documents produced by the Contextual Dynamics Lab

latex-base

Storytelling with Data Assignment 3: Binary converter

storytelling-with-data-binary-converter

ELIZA chatbot assignment for PSYC 32

psyc32-eliza

pupil-memory-analysis

a package for acquiring fitness tracker (Fitbit) and cognitive task (JsPsych) data on the Amazon Mechanical Turk platform

brainfit-task

JavaScript

tubeTopics

Creates a topic model from a YouTube audio track using Latent Dirichlet Allocation (LDA) and google speech-to-text

JavaScript

pca_paper

Contextual Dynamics Lab (Dartmouth) code related to the CCN Algonauts 2021 challenge

CDL-algonauts-2021

AttentionGroupHackathon

Hackathon for the attention group

prediction-retrodiction-paper

Dynamic Inter-subject Representational Similarity Analysis

DIRSA

Contains example datasets for HyperTools package

hypertools-examples-data

sequences

Define a "repeatability" index that says, for an arbitrary time series, how much "fractal structure" there is in the signal.

magellan_data

Data from Manning et al. (2014) in an updated and convenient format

Demo hopfield network code

hopfield-demo

Interactive tutorials for quail

quail-example-notebooks

Demo of hypertools-derived thought trajectories

thought-trajectories-demo