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CellProfiler
An open-source application for biological image analysisCellProfiler-Analyst
Open-source software for exploring and analyzing large, high-dimensional image-derived data.python-bioformats
Read and write life sciences file formatstutorials
CellProfiler tutorial pipelines and imagesCellProfiler-plugins
Community-contributed and experimental CellProfiler modules.Distributed-CellProfiler
Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.centrosome
An open source image processing librarynotebooks
Jupyter notebooks for CellProfiler and friendsexamples
Example CellProfiler pipelines.CellProfiler-1.0
⚠️ ARCHIVED ⚠️ CellProfiler 1.0 (Matlab-based), current version at: CellProfiler/CellProfilercore
Core classes and components used by CellProfilerdistribution
Everything needed to build CellProfiler for your favorite environment.cellprofiler.github.com-backup
OLD cp website repo. Current repo is here: https://github.com/CellProfiler/cellprofiler.github.com. We are currently in the process of transferring any remaining and relevant issues to the current Github repo so that this repo can then be deleted.library
docker
CPCharm
prokaryote
CellProfiler’s Java dependenciescellprofiler.github.com
CellProfiler WebsiteBatchProfiler
jenkins
meoir
Profiling modules from CellProfiler-Analyst for exploring and analyzing large, high-dimensional image-derived data. http://cellprofiler.orgknime-bridge
ZMQ connection between CellProfiler and KnimeDistributed-Something
Run encapsulated docker containers that do... something in the Amazon Web Services infrastructure.CellProfiler-build
Infrastructure for continuous integration and automatic builds of CellProfiler internally at the Broad instituteLove Open Source and this site? Check out how you can help us