CellProfiler/Distributed-CellProfiler

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26
Rank 930,752 (Top 19 %)
Language
Python
Created over 8 years ago
Updated almost 3 years ago

CellProfiler/Distributed-CellProfiler

CellProfiler

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Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.

CellProfiler

An open-source application for biological image analysis

CellProfiler-Analyst

Open-source software for exploring and analyzing large, high-dimensional image-derived data.

python-bioformats

Read and write life sciences file formats

tutorials

CellProfiler tutorial pipelines and images

Jupyter Notebook

CellProfiler-plugins

Community-contributed and experimental CellProfiler modules.

centrosome

An open source image processing library

notebooks

Jupyter notebooks for CellProfiler and friends

Jupyter Notebook

stitching

Image stitching

examples

Example CellProfiler pipelines.

CellProfiler-1.0

⚠️ ARCHIVED ⚠️ CellProfiler 1.0 (Matlab-based), current version at: CellProfiler/CellProfiler

core

Core classes and components used by CellProfiler

distribution

Everything needed to build CellProfiler for your favorite environment.

cellprofiler.github.com-backup

OLD cp website repo. Current repo is here: https://github.com/CellProfiler/cellprofiler.github.com. We are currently in the process of transferring any remaining and relevant issues to the current Github repo so that this repo can then be deleted.

library

docker

CPCharm

prokaryote

CellProfiler’s Java dependencies

cellprofiler.github.com

CellProfiler Website

BatchProfiler

jenkins

meoir

Profiling modules from CellProfiler-Analyst for exploring and analyzing large, high-dimensional image-derived data. http://cellprofiler.org

knime-bridge

ZMQ connection between CellProfiler and Knime

Distributed-Something

Run encapsulated docker containers that do... something in the Amazon Web Services infrastructure.

CellProfiler-build

Infrastructure for continuous integration and automatic builds of CellProfiler internally at the Broad institute