CellProfiler/notebooks CellProfiler/notebooks

  • Stars
    star
    12
  • Rank 1,597,372 (Top 32 %)
  • Language
    Jupyter Notebook
  • Created almost 7 years ago
  • Updated over 6 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
CellProfiler/notebooks
github

CellProfiler

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Jupyter notebooks for CellProfiler and friends

More Repositories

1

CellProfiler

An open-source application for biological image analysis
Python
899
star
2

CellProfiler-Analyst

Open-source software for exploring and analyzing large, high-dimensional image-derived data.
Python
145
star
3

python-bioformats

Read and write life sciences file formats
Python
131
star
4

tutorials

CellProfiler tutorial pipelines and images
Jupyter Notebook
81
star
5

CellProfiler-plugins

Community-contributed and experimental CellProfiler modules.
Python
56
star
6

Distributed-CellProfiler

Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
Python
26
star
7

centrosome

An open source image processing library
Python
17
star
8

stitching

Image stitching
Python
11
star
9

examples

Example CellProfiler pipelines.
Makefile
11
star
10

CellProfiler-1.0

⚠️ ARCHIVED ⚠️ CellProfiler 1.0 (Matlab-based), current version at: CellProfiler/CellProfiler
MATLAB
9
star
11

core

Core classes and components used by CellProfiler
Python
5
star
12

distribution

Everything needed to build CellProfiler for your favorite environment.
Python
4
star
13

cellprofiler.github.com-backup

OLD cp website repo. Current repo is here: https://github.com/CellProfiler/cellprofiler.github.com. We are currently in the process of transferring any remaining and relevant issues to the current Github repo so that this repo can then be deleted.
HTML
3
star
14

library

Python
2
star
15

docker

Makefile
2
star
16

CPCharm

Python
2
star
17

prokaryote

CellProfiler’s Java dependencies
Java
2
star
18

cellprofiler.github.com

CellProfiler Website
JavaScript
2
star
19

BatchProfiler

Python
1
star
20

jenkins

Shell
1
star
21

meoir

Profiling modules from CellProfiler-Analyst for exploring and analyzing large, high-dimensional image-derived data. http://cellprofiler.org
Python
1
star
22

knime-bridge

ZMQ connection between CellProfiler and Knime
Java
1
star
23

Distributed-Something

Run encapsulated docker containers that do... something in the Amazon Web Services infrastructure.
Python
1
star
24

CellProfiler-build

Infrastructure for continuous integration and automatic builds of CellProfiler internally at the Broad institute
Python
1
star