Explore @seqeralabs Open Source projects

Seqera Labs (@seqeralabs)

seqeralabs

Stars
488
Global Org. Rank 24,226 (Top 8 %)
Registered about 6 years ago
Most used languages

Nextflow 27.0 %

Shell
24.3 %

Java
13.5 %

Groovy
10.8 %

HTML
8.1 %

Python
5.4 %

HCL 5.4 %

MDX 2.7 %

CSS
2.7 %
Location 🇪🇸 Spain
Country Total Rank 877
Country Ranking

Nextflow 4

Groovy
5

MDX 25

HCL 58

Shell
202

Java
241

CSS
390

HTML
622

Python
1,016

nf-tower

Nextflow Tower system

tower-cli

Nextflow Tower CLI tool

wave

On-demand containers provisioning service

seqera-kit

Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)

wave-showcase

Examples showing how to configure Nextflow to run with Wave containers provisioning service

nf-k8s-best-practices

A best practices guide for Nextflow on Kubernetes

nf-training-advanced

Customer workshop materials

gatk4-germline-snps-indels

Workflow for germline short variant discovery using GATK4

showcase

Infrastructure as code implementation of the seqeralabs/showcase on Seqera

wave-cli

Command line tool for Wave containers provisioning service

nf-dragen

POC Nextflow pipeline to run Illumina DRAGEN software

tower-agent

Agent app that allows connecting remote batch schedulers to Tower Cloud

nf-tower-docs

Nextflow Tower Documentation

nf-tower-aws

Repository containing required policies for Nextflow Tower deployment on AWS

nf-sentieon

POC Nextflow pipeline to run Sentieon software

nf-aggregate

Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)

git-readme

An opinionated collection of Git one-liners

nf-canary

A minimal Nextflow workflow for testing infrastructure.

multi-projects

Sandbox for nextflow multi-project in Nextflow.

unsafe-tracker

JVM agent that track access to off-heap memory via Unsafe class (BETA)

terraform-seqera-aws

conda-recipes

Conda recipes for the Eel project

logos

Seqera official logos

nf-training-intro

docker-sync

Script to sync a Docker repositories

tower-public-roadmap

The Tower public roadmap

nextflow-website

WORK IN PROGRESS - Nextflow website Hugo based

datasets-automation-blog

Repository for the Seqera Labs Workflow Automation for Nextflow Tower Pipelines blog post

cx-field-tools-installer

Unofficial Terraform solution to help clients install Seqera Platform

xpack-google

Google extension package for Nextflow

platform-installer

Seqera Platform installer scripts

nf-raffle

This repository contains code for the nf-raffle pipeline by Seqera, used to conduct raffles at events.

nf-schema-testing

Dummy pipeline for testing variations of the Nextflow schema

aws-s3-download

Bare minimal S3 download client for testing purpose

xpack-dnanexus

DNAnexus extension package for Nextflow

event-handler-app-interview

A repository with a skeleton application for remote Interview

nf-pipelines

nf-core-tower-azure-poc

setup-seqerakit

Github Action to set up seqerakit

docs

Source code for the Seqera documentation portal.

libseqera

Library for Java & Groovy modules shared across Seqera projects

fusion-vs-mountpoint-benchmark

Benchmark suite to compare of Fusion, AWS Mountpoint and RClone

slurm-simulator

Allow simulating Slurm command locally running it in Docker container