@samtools
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samtools

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  • Stars
    star
    3,821
  • Global Org. Rank 5,756 (Top 2 %)
  • Registered over 12 years ago
  • Most used languages
    C
         57.1 %
    Java
         14.3 %
    TeX
         7.1 %
    HTML
         7.1 %
    CSS
         7.1 %
    Perl
         7.1 %

Top repositories

1

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data
C
1,480
star
2

htslib

C library for high-throughput sequencing data formats
C
738
star
3

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats
TeX
600
star
4

bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
C
581
star
5

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.
Java
278
star
6

tabix

Note: tabix and bgzip binaries are now part of the HTSlib project.
C
88
star
7

htscodecs

Custom compression for CRAM and others.
C
28
star
8

htslib-plugins

Plugins for use with HTSlib
C
9
star
9

www.htslib.org

The http://www.htslib.org/ web site
HTML
8
star
10

htsjdk-next-beta

Staging ground for the development of the next major version of HTSJDK
Java
6
star
11

sapi

Sequence Alignment Programming Interface
C
6
star
12

samtools.github.com

The http://samtools.github.io/ (master) and legacy http://samtools.sourceforge.net/ (sf-pages) web sites
CSS
4
star
13

c-maint

Maintenance scripts used with the htslib/samtools/bcftools repositories
Perl
3
star
14

htslib-crypt4gh

HTSlib crypt4gh plug-in
C
1
star