Explore @montilab Open Source projects

@montilab

montilab

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238
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Registered over 5 years ago
Most used languages

R
73.9 %

Nextflow 8.7 %

Python
4.3 %

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4.3 %

HTML
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Dockerfile
4.3 %

hypeR

An R Package for Geneset Enrichment Workflows

pipeliner

A flexible Nextflow-based framework for the definition of sequencing data processing pipelines

nf-gwas-pipeline

A Nextflow Genome-Wide Association Study (GWAS) Pipeline

CaDrA

Candidate Drivers Analysis: Multi-Omic Search for Candidate Drivers of Functional Signatures

BS831

Course Materials for Genomics Data Mining

bands

Simple interactive chromosome maps written in R

iEDGE

integrative analysis of (epi-)DNA and gene expression data for the identification of candidate cancer drivers

shine

Structure Learning for Hierarchical Networks

ppi-context

Contextualization of protein-protein interaction databases by cell line

K2Taxonomer

A tool for the multi-resolution characterization of molecular taxonomies in bulk and single-cell omics data

OmicSignature

pipeliner-2

Pipeliner upgraded for Nextflow DSL2 modules

Xposome

Chemical Screenings using high-throughput transcriptomics assays

ConAn

Resampling-Based Differential Network Connectivity Analysis

SigRepoR

knnmi

k-nearest neighbor mutual information estimator

ProteomicsSignaturesCentenarians

Analysis scripts associated to Sebastiani et al., Aging Cell 20(2):e13290, 2021

netviz

A Shiny Application for Visualization and Analysis of Networks

vennr

Area proportional venn and euler diagrams through venn.js

hypeR-workshop

Efficient, Scalable, and Reproducible Enrichment Workflows

shine-nf

A Collection of Nextflow Modules for Bayesian Structure Learning

bieulergy

Interactive analysis of multi-omics regulatory networks

yQTLpipeline

evalGSVAsig

Evaluate genes driving signature