Explore @ViennaRNA Open Source projects

@ViennaRNA

ViennaRNA

Stars
534
Global Org. Rank 22,567 (Top 8 %)
Registered over 7 years ago
Most used languages

C
29.2 %

JavaScript
25.0 %

C++
20.8 %

Python
16.7 %

Perl
4.2 %

Jupyter Notebook
4.2 %
Location 🇦🇹 Austria
Country Total Rank 326
Country Ranking

C
34

Perl
66

JavaScript
133

C++
176

Python
179

Jupyter Notebook
402

ViennaRNA

The ViennaRNA Package

forna

Create force-directed graphs of RNA secondary structures.

forgi

An RNA manipulation library.

RNAcode

RNAcode - Detecting protein coding genes in multiple sequence alignment

fornac

A container for the forna visualization software.

RNAsketch

Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.

RNAz

RNAz - predicting structural noncoding RNAs

RNAblueprint

RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints

rnadeep

Code and data for the RNAML paper

ernwin

Sample and predict coarse grain 3D RNA structures

RNAxplorer

RNAxplorer - Explore the RNA conformation space through sampling and other techniques

drforna

Interactive visualization of cotranscriptional folding

Treekin

Compute folding dynamics on coarse grained version of an energy landscape by numeric integration of a Markov process

SISSIz

SISSIz: Dinucleotide controlled random alignments and RNA gene prediction

RNAforester

A tool for aligning RNA secondary structures. It's user interface integrates to those of the tools of the ViennaRNA Package (http://www.tbi.univie.ac.at/RNA/).

pourRNA

rnaplot

Barriers

Compute local minima and energy barriers of a landscape

ViennaRNA-perl

Additional Perl modules living in the namespace RNA. They augment the Perl 5 wrapped libRNA C-library of the ViennaRNA Package and are usually included in the ViennaRNA Package distribution.

Kinwalker

A program to predict RNA folding trajectories and first passage times by connecting the denatured state with the predicted native structure through a series of intermediate states.

probing

RNA folding with soft constraints

dotstruct

An enhanced RNA dotplot showing the associated structures.

rnautils

A collection of functionality for manipulating RNA secondary structures.

VEEnext

Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'

CHIKV

Nextstrain community build 'Molecular epidemiology of Chikungunya virus'

PLfoldSampling

RNAPLfold revisited

Jupyter Notebook