ViennaRNA/RNAxplorer ViennaRNA/RNAxplorer

  • Stars
    star
    7
  • Rank 2,232,475 (Top 46 %)
  • Language
    C
  • License
    GNU General Publi...
  • Created about 4 years ago
  • Updated over 3 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
ViennaRNA/RNAxplorer
github

ViennaRNA

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

RNAxplorer - Explore the RNA conformation space through sampling and other techniques

More Repositories

1

ViennaRNA

The ViennaRNA Package
C
262
star
2

forna

Create force-directed graphs of RNA secondary structures.
JavaScript
91
star
3

forgi

An RNA manipulation library.
Python
45
star
4

RNAcode

RNAcode - Detecting protein coding genes in multiple sequence alignment
C
22
star
5

fornac

A container for the forna visualization software.
JavaScript
17
star
6

RNAsketch

Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
Python
16
star
7

RNAz

RNAz - predicting structural noncoding RNAs
C++
14
star
8

RNAblueprint

RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints
C++
8
star
9

rnadeep

Code and data for the RNAML paper
Python
8
star
10

ernwin

Sample and predict coarse grain 3D RNA structures
Python
7
star
11

drforna

Interactive visualization of cotranscriptional folding
JavaScript
6
star
12

Treekin

Compute folding dynamics on coarse grained version of an energy landscape by numeric integration of a Markov process
C++
5
star
13

SISSIz

SISSIz: Dinucleotide controlled random alignments and RNA gene prediction
C
5
star
14

RNAforester

A tool for aligning RNA secondary structures. It's user interface integrates to those of the tools of the ViennaRNA Package (http://www.tbi.univie.ac.at/RNA/).
C
4
star
15

pourRNA

C++
4
star
16

rnaplot

JavaScript
3
star
17

Barriers

Compute local minima and energy barriers of a landscape
C
3
star
18

ViennaRNA-perl

Additional Perl modules living in the namespace RNA. They augment the Perl 5 wrapped libRNA C-library of the ViennaRNA Package and are usually included in the ViennaRNA Package distribution.
Perl
2
star
19

Kinwalker

A program to predict RNA folding trajectories and first passage times by connecting the denatured state with the predicted native structure through a series of intermediate states.
C++
2
star
20

probing

RNA folding with soft constraints
C
2
star
21

dotstruct

An enhanced RNA dotplot showing the associated structures.
JavaScript
2
star
22

rnautils

A collection of functionality for manipulating RNA secondary structures.
JavaScript
1
star
23

VEEnext

Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'
1
star
24

CHIKV

Nextstrain community build 'Molecular epidemiology of Chikungunya virus'
1
star
25

PLfoldSampling

RNAPLfold revisited
Jupyter Notebook
1
star