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ViennaRNA
The ViennaRNA Packageforna
Create force-directed graphs of RNA secondary structures.forgi
An RNA manipulation library.RNAcode
RNAcode - Detecting protein coding genes in multiple sequence alignmentfornac
A container for the forna visualization software.RNAsketch
Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.RNAz
RNAz - predicting structural noncoding RNAsRNAblueprint
RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraintsrnadeep
Code and data for the RNAML paperernwin
Sample and predict coarse grain 3D RNA structuresRNAxplorer
RNAxplorer - Explore the RNA conformation space through sampling and other techniquesSISSIz
SISSIz: Dinucleotide controlled random alignments and RNA gene predictiondrforna
Interactive visualization of cotranscriptional foldingTreekin
Compute folding dynamics on coarse grained version of an energy landscape by numeric integration of a Markov processRNAforester
A tool for aligning RNA secondary structures. It's user interface integrates to those of the tools of the ViennaRNA Package (http://www.tbi.univie.ac.at/RNA/).pourRNA
Barriers
Compute local minima and energy barriers of a landscapeKinwalker
A program to predict RNA folding trajectories and first passage times by connecting the denatured state with the predicted native structure through a series of intermediate states.probing
RNA folding with soft constraintsdotstruct
An enhanced RNA dotplot showing the associated structures.ViennaRNA-perl
Additional Perl modules living in the namespace RNA. They augment the Perl 5 wrapped libRNA C-library of the ViennaRNA Package and are usually included in the ViennaRNA Package distribution.PLfoldSampling
RNAPLfold revisitedrnautils
A collection of functionality for manipulating RNA secondary structures.VEEnext
Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'CHIKV
Nextstrain community build 'Molecular epidemiology of Chikungunya virus'Love Open Source and this site? Check out how you can help us