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ViennaRNA
The ViennaRNA Packageforna
Create force-directed graphs of RNA secondary structures.forgi
An RNA manipulation library.RNAcode
RNAcode - Detecting protein coding genes in multiple sequence alignmentfornac
A container for the forna visualization software.RNAsketch
Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.RNAz
RNAz - predicting structural noncoding RNAsRNAblueprint
RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraintsrnadeep
Code and data for the RNAML paperRNAxplorer
RNAxplorer - Explore the RNA conformation space through sampling and other techniquesernwin
Sample and predict coarse grain 3D RNA structuresSISSIz
SISSIz: Dinucleotide controlled random alignments and RNA gene predictiondrforna
Interactive visualization of cotranscriptional foldingTreekin
Compute folding dynamics on coarse grained version of an energy landscape by numeric integration of a Markov processRNAforester
A tool for aligning RNA secondary structures. It's user interface integrates to those of the tools of the ViennaRNA Package (http://www.tbi.univie.ac.at/RNA/).pourRNA
rnaplot
Barriers
Compute local minima and energy barriers of a landscapeViennaRNA-perl
Additional Perl modules living in the namespace RNA. They augment the Perl 5 wrapped libRNA C-library of the ViennaRNA Package and are usually included in the ViennaRNA Package distribution.Kinwalker
A program to predict RNA folding trajectories and first passage times by connecting the denatured state with the predicted native structure through a series of intermediate states.probing
RNA folding with soft constraintsdotstruct
An enhanced RNA dotplot showing the associated structures.rnautils
A collection of functionality for manipulating RNA secondary structures.CHIKV
Nextstrain community build 'Molecular epidemiology of Chikungunya virus'PLfoldSampling
RNAPLfold revisitedLove Open Source and this site? Check out how you can help us