Explore @SciLifeLab Open Source projects

Science For Life Laboratory (@SciLifeLab)

SciLifeLab

Stars
471
Global Org. Rank 24,303 (Top 8 %)
Registered about 13 years ago
Most used languages

Python
38.9 %

Groovy
11.1 %

JavaScript
11.1 %

CSS
11.1 %

PHP
5.6 %

Cython 5.6 %

Shell
5.6 %

Rust
5.6 %

Jupyter Notebook
5.6 %
Location 🇸🇪 Sweden
Country Total Rank 673
Country Ranking

Cython 1

Groovy
20

Jupyter Notebook
110

Rust
296

CSS
355

Python
787

Shell
1,080

JavaScript
1,088

PHP
1,118

TIDDIT

TIDDIT - structural variant calling

facs

Fast and Accurate Classification of Sequences using Bloom filters

Jupyter Notebook

genomics-status

Tornado server for tracking samples at NGI Stockholm

NGI-CellRaiser

Pipeline for analysing 10X single cell data

flowcell_parser

Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output

umi-transfer

A Rust software to extract Unique Molecular Identifiers in FastQ files and embedd them into the ID of the corresponding reads.

NGI-NextflowDocs

Common documentation for National Genomics Infrastructure pipelines built with Nextflow

standalone_scripts

Repository to store standalone scripts that do not belong to any bigger package or repository

CAW-containers

Containers for CAW

gapest

Reference implementation of the scaffolding gap size estimation algorithm by Kristoffer Sahlin

internal-provisioning

Ansible repository for deployment stuff

genomics-dashboard

dotfiles

statusdb

Python wrappers and methods to work with CouchDB's instance at NGI Stockholm

scilifelab.github.io

Web portal for open source (research) projects at SciLifeLab

modules.sf.net

Adhoc software "packaged" for the ancient and deprecated "module system" (http://modules.sf.net/)

scilifelab_parsers

Module for scilifelab parsers of metrics and other files

software-development

General guidelines and style guide for software developed at SciLifeLab

slog

simple lab logging system

portal

SciLifeLab Genomics Customer Portal