SciLifeLab/scilifelab.github.io

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SciLifeLab/scilifelab.github.io

SciLifeLab

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Web portal for open source (research) projects at SciLifeLab

TIDDIT

TIDDIT - structural variant calling

facs

Fast and Accurate Classification of Sequences using Bloom filters

Jupyter Notebook

genomics-status

Tornado server for tracking samples at NGI Stockholm

NGI-CellRaiser

Pipeline for analysing 10X single cell data

flowcell_parser

Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output

umi-transfer

A Rust software to extract Unique Molecular Identifiers in FastQ files and embedd them into the ID of the corresponding reads.

NGI-NextflowDocs

Common documentation for National Genomics Infrastructure pipelines built with Nextflow

standalone_scripts

Repository to store standalone scripts that do not belong to any bigger package or repository

CAW-containers

Containers for CAW

gapest

Reference implementation of the scaffolding gap size estimation algorithm by Kristoffer Sahlin

internal-provisioning

Ansible repository for deployment stuff

genomics-dashboard

dotfiles

statusdb

Python wrappers and methods to work with CouchDB's instance at NGI Stockholm

modules.sf.net

Adhoc software "packaged" for the ancient and deprecated "module system" (http://modules.sf.net/)

scilifelab_parsers

Module for scilifelab parsers of metrics and other files

software-development

General guidelines and style guide for software developed at SciLifeLab

slog

simple lab logging system

portal

SciLifeLab Genomics Customer Portal