Cardiac Modelling (@CardiacModelling)
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CardiacModelling

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Top repositories

1

markov-builder

Tool for building and manipulating Markov models of ion-channel kinetics
Python
5
star
2

fitting-notebooks

Examples of parameter estimation in cardiac cell electrophysiology using Myokit and PINTS.
Jupyter Notebook
4
star
3

FourWaysOfFitting

Code to compare four different ways to fit an ion current model
Python
4
star
4

RapidCharacterisationProtocols

Collection of experimental protocols in common patch clamp formats for rapid characterisation of ion channels
Python
4
star
5

fickleheart-method-tutorials

Code for the tutorials in the Fickle Heart model calibration with discrepancy 2020 paper.
Python
3
star
6

VoltageClampModel

Code to add a mathematical model of voltage-clamp artefacts to your ion channel simulations
Python
3
star
7

hERGRapidCharacterisation

Rapid characterisation of hERG channel kinetics
Python
3
star
8

BenNevis

"Where is Ben Nevis" presents the landscape of Great Britain as a testbed for optimisation and sampling methods.
Python
2
star
9

ap-nimbus-client

JavaScript
2
star
10

hERG-binding-mechanisms

Source code and data for reproducing "The impact of uncertainty in hERG binding mechanism on in silico predictions of drug-induced proarrhythmic risk".
Python
2
star
11

WIRES

Figures and code for examples in WIREs review on calibrating electrophysiology models
Python
2
star
12

ionBench

A benchmarking tool for comparing different parameter optimization algorithms for ion channel models
Python
2
star
13

space-filling-designs

Phase-voltage space filling optimal designs in Matlab
MATLAB
2
star
14

ical-model-review

Python
1
star
15

ap-nimbus

Cardiac modelling in containers
1
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16

ap-nimbus-app-manager

API for cloudified AP Predict
JavaScript
1
star
17

appredict-docker

Shell
1
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18

Gamma_0

Code associated with a publication on the action potential model parameter representing missing charge
Python
1
star
19

nonlinear-time-dependent-leak

Data and code for reproducing the results in the nonlinear time-dependent leak paper.
Python
1
star
20

tailored-ipsc-models

Code to reproduce the simulations and figures in "Tailoring mathematical models to stem-cell derived cardiomyocyte lines can improve predictions of drug-induced changes to their electrophysiology"
Python
1
star
21

L-type-Ca-rundown-experiments

An investigation of rundown in automated patch clamp L-type calcium current
Jupyter Notebook
1
star