CardiacModelling/BenNevis CardiacModelling/BenNevis

  • Stars
    star
    2
  • Language
    Python
  • License
    Other
  • Created almost 3 years ago
  • Updated 3 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
CardiacModelling/BenNevis
github

CardiacModelling

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

"Where is Ben Nevis" presents the landscape of Great Britain as a testbed for optimisation and sampling methods.

More Repositories

1

markov-builder

Tool for building and manipulating Markov models of ion-channel kinetics
Python
5
star
2

fitting-notebooks

Examples of parameter estimation in cardiac cell electrophysiology using Myokit and PINTS.
Jupyter Notebook
4
star
3

FourWaysOfFitting

Code to compare four different ways to fit an ion current model
Python
4
star
4

RapidCharacterisationProtocols

Collection of experimental protocols in common patch clamp formats for rapid characterisation of ion channels
Python
4
star
5

fickleheart-method-tutorials

Code for the tutorials in the Fickle Heart model calibration with discrepancy 2020 paper.
Python
3
star
6

VoltageClampModel

Code to add a mathematical model of voltage-clamp artefacts to your ion channel simulations
Python
3
star
7

hERGRapidCharacterisation

Rapid characterisation of hERG channel kinetics
Python
3
star
8

ap-nimbus-client

JavaScript
2
star
9

hERG-binding-mechanisms

Source code and data for reproducing "The impact of uncertainty in hERG binding mechanism on in silico predictions of drug-induced proarrhythmic risk".
Python
2
star
10

WIRES

Figures and code for examples in WIREs review on calibrating electrophysiology models
Python
2
star
11

ionBench

A benchmarking tool for comparing different parameter optimization algorithms for ion channel models
Python
2
star
12

space-filling-designs

Phase-voltage space filling optimal designs in Matlab
MATLAB
2
star
13

ical-model-review

Python
1
star
14

ap-nimbus

Cardiac modelling in containers
1
star
15

ap-nimbus-app-manager

API for cloudified AP Predict
JavaScript
1
star
16

appredict-docker

Shell
1
star
17

Gamma_0

Code associated with a publication on the action potential model parameter representing missing charge
Python
1
star
18

nonlinear-time-dependent-leak

Data and code for reproducing the results in the nonlinear time-dependent leak paper.
Python
1
star
19

tailored-ipsc-models

Code to reproduce the simulations and figures in "Tailoring mathematical models to stem-cell derived cardiomyocyte lines can improve predictions of drug-induced changes to their electrophysiology"
Python
1
star
20

L-type-Ca-rundown-experiments

An investigation of rundown in automated patch clamp L-type calcium current
Jupyter Notebook
1
star