Michaล‚ Krassowski (@krassowski)
github

krassowski

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Top repositories

1

complex-upset

A library for creating complex UpSet plots with ggplot2 geoms
R
353
star
2

jupyterlab-go-to-definition

Navigate to variable's definition with a click in JupyterLab (or with a few key strokes)
TypeScript
214
star
3

jupyter-manim

manim cell magic for IPython/Jupyter to show the output video
Python
187
star
4

Anki-Night-Mode

Enabling studying at night with Anki - without eye strain
Python
72
star
5

jupyterlab-citation-manager

Citation Manager for JupyterLab using Zotero Web API
TypeScript
47
star
6

jupyter-helpers

A collection of helpers for Jupyter/IPython
Python
45
star
7

easy-entrez

Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
Python
45
star
8

declarative-parser

Modern, declarative argument parser for Python 3.6+
Python
34
star
9

multi-omics-state-of-the-field

Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
Jupyter Notebook
24
star
10

Anki-TouchScreen

Touchscreen functionality for Anki
Python
22
star
11

nbpipeline

Snakemake-like pipeline manager for reproducible Jupyter Notebooks
Python
15
star
12

drug-disease-profile-matching

Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap
Jupyter Notebook
14
star
13

data-vault

IPython magic for simple, organized, compressed and encrypted: storage & transfer of files between notebooks.
Python
12
star
14

computational-notebooks-for-biomedical-research

NGSeminar on the use of Jupyter and R notebooks in biomedical research
Jupyter Notebook
11
star
15

anki_testing

A small utility for testing Anki 2.1 addons
Python
10
star
16

jupyterlab-dagitty

JupyterLab renderer of dagitty causal diagrams
TypeScript
10
star
17

gsea-api

Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
Python
8
star
18

rpy2-complex-heatmap-grammar

Python heatmap interface using intuitive grammar of graphics, implemented as an rpy2 wrapper around ComplexHeatmap package.
Python
8
star
19

Anki-Zoom

Zoom add-on for Anki 2.1, forked from ospalh/anki-addons
Python
6
star
20

enhanced-multiprocessing

A wrapper around Python's multiprocessing, providing support for tqdm progress bars and shared arguments
Python
3
star
21

plotnine3d

3D geoms for plotnine (grammar of graphics in Python)
Python
3
star
22

jupyterlab-citation-data

Citation data for jupyterlab-citation-manager
Python
2
star
23

jupyterlab-voice-control

Voice control over JupyterLab and Jupyter notebooks
TypeScript
2
star
24

vmd-agr-parser

Simple script for plotting .agr (Grace) files created with VMD (Visual Molecular Dynamics). Allows export to csv/svg/png.
Python
1
star