krassowski/nbpipeline

Stars
15
Rank 1,371,379 (Top 28 %)
Language
Python
License
MIT License
Created over 5 years ago
Updated about 3 years ago

krassowski/nbpipeline

krassowski

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Snakemake-like pipeline manager for reproducible Jupyter Notebooks

complex-upset

A library for creating complex UpSet plots with ggplot2 geoms

jupyterlab-go-to-definition

Navigate to variable's definition with a click in JupyterLab (or with a few key strokes)

jupyter-manim

manim cell magic for IPython/Jupyter to show the output video

Anki-Night-Mode

Enabling studying at night with Anki - without eye strain

jupyterlab-citation-manager

Citation Manager for JupyterLab using Zotero Web API

jupyter-helpers

A collection of helpers for Jupyter/IPython

easy-entrez

Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.

declarative-parser

Modern, declarative argument parser for Python 3.6+

multi-omics-state-of-the-field

Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"

Jupyter Notebook

Anki-TouchScreen

Touchscreen functionality for Anki

drug-disease-profile-matching

Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap

Jupyter Notebook

data-vault

IPython magic for simple, organized, compressed and encrypted: storage & transfer of files between notebooks.

computational-notebooks-for-biomedical-research

NGSeminar on the use of Jupyter and R notebooks in biomedical research

Jupyter Notebook

anki_testing

A small utility for testing Anki 2.1 addons

jupyterlab-dagitty

JupyterLab renderer of dagitty causal diagrams

gsea-api

Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)

rpy2-complex-heatmap-grammar

Python heatmap interface using intuitive grammar of graphics, implemented as an rpy2 wrapper around ComplexHeatmap package.

Anki-Zoom

Zoom add-on for Anki 2.1, forked from ospalh/anki-addons

enhanced-multiprocessing

A wrapper around Python's multiprocessing, providing support for tqdm progress bars and shared arguments

plotnine3d

3D geoms for plotnine (grammar of graphics in Python)

jupyterlab-citation-data

Citation data for jupyterlab-citation-manager

jupyterlab-voice-control

Voice control over JupyterLab and Jupyter notebooks

vmd-agr-parser

Simple script for plotting .agr (Grace) files created with VMD (Visual Molecular Dynamics). Allows export to csv/svg/png.