Jorge Langa (@jlanga)
github

jlanga

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Top repositories

1

smsk

Snakemake skeleton - Build workflows with Snakemake
Python
15
star
2

smsk_trinotate

Snakemake workflow to run transdecoder + trinotate
Python
8
star
3

smsk_selection

Snakemake project to predict orthogroups and find patterns of postive selection with orthofinder and fastcodeml
C++
5
star
4

smsk_khmer_trinity

Transcriptome assembly via digital normalization with khmer and Trinity
Python
4
star
5

smsk_popoolation

Snakemake pipeline for Popoolation and Popoolation2
Perl
4
star
6

exfi

Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools
Python
3
star
7

smsk_454

Snakemake pipeline for de novo transcriptome assembly with 454 reads
Python
2
star
8

khmer_trinity_snakemake

A Snakemake pipeline for Illumina Transcriptome Assembly: trimmomatic + dignorm+ trinity
Python
2
star
9

snakehooks

git hooks for snakemake pipelines
Shell
1
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10

smsk_annotate

Pipeline to annotate a transcriptome assembly, coding and noncoding parts.
R
1
star
11

2023-mer_metagenomics

Tutorial and assignments for the course Marine Genomics at IMBRSEA, Plentzia
Jupyter Notebook
1
star
12

smsk_tuxedo2

snakemake files of the tuxedo v2 pipeline from Pertea et al 2016
Python
1
star
13

md_paper

md_paper is a skeleton of a paper to be writen in Markdown and compiled into a pdf or docx with pandoc
Shell
1
star
14

oari_paper

Selection sweep scan of _Ovis aries_ populations. Version for paper.
Shell
1
star
15

smsk_gatk_germline

Snakemake workflow to perform GATK's best practices for Germline SNP & Indel Discovery in Whole Genome and Exome Sequence
Python
1
star