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smsk
Snakemake skeleton - Build workflows with Snakemakesmsk_trinotate
Snakemake workflow to run transdecoder + trinotatesmsk_selection
Snakemake project to predict orthogroups and find patterns of postive selection with orthofinder and fastcodemlsmsk_khmer_trinity
Transcriptome assembly via digital normalization with khmer and Trinitysmsk_popoolation
Snakemake pipeline for Popoolation and Popoolation2exfi
Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtoolssmsk_454
Snakemake pipeline for de novo transcriptome assembly with 454 readskhmer_trinity_snakemake
A Snakemake pipeline for Illumina Transcriptome Assembly: trimmomatic + dignorm+ trinitysnakehooks
git hooks for snakemake pipelinessmsk_annotate
Pipeline to annotate a transcriptome assembly, coding and noncoding parts.smsk_tuxedo2
snakemake files of the tuxedo v2 pipeline from Pertea et al 2016md_paper
md_paper is a skeleton of a paper to be writen in Markdown and compiled into a pdf or docx with pandocoari_paper
Selection sweep scan of _Ovis aries_ populations. Version for paper.smsk_gatk_germline
Snakemake workflow to perform GATK's best practices for Germline SNP & Indel Discovery in Whole Genome and Exome SequenceLove Open Source and this site? Check out how you can help us