jlanga/smsk_selection jlanga/smsk_selection

  • Stars
    star
    5
  • Rank 2,861,937 (Top 57 %)
  • Language
    C++
  • License
    MIT License
  • Created about 8 years ago
  • Updated over 3 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
jlanga/smsk_selection
github

jlanga

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Snakemake project to predict orthogroups and find patterns of postive selection with orthofinder and fastcodeml

More Repositories

1

smsk

Snakemake skeleton - Build workflows with Snakemake
Python
15
star
2

smsk_trinotate

Snakemake workflow to run transdecoder + trinotate
Python
8
star
3

smsk_khmer_trinity

Transcriptome assembly via digital normalization with khmer and Trinity
Python
4
star
4

smsk_popoolation

Snakemake pipeline for Popoolation and Popoolation2
Perl
4
star
5

exfi

Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools
Python
3
star
6

smsk_454

Snakemake pipeline for de novo transcriptome assembly with 454 reads
Python
2
star
7

khmer_trinity_snakemake

A Snakemake pipeline for Illumina Transcriptome Assembly: trimmomatic + dignorm+ trinity
Python
2
star
8

snakehooks

git hooks for snakemake pipelines
Shell
1
star
9

smsk_annotate

Pipeline to annotate a transcriptome assembly, coding and noncoding parts.
R
1
star
10

2023-mer_metagenomics

Tutorial and assignments for the course Marine Genomics at IMBRSEA, Plentzia
Jupyter Notebook
1
star
11

smsk_tuxedo2

snakemake files of the tuxedo v2 pipeline from Pertea et al 2016
Python
1
star
12

md_paper

md_paper is a skeleton of a paper to be writen in Markdown and compiled into a pdf or docx with pandoc
Shell
1
star
13

oari_paper

Selection sweep scan of _Ovis aries_ populations. Version for paper.
Shell
1
star
14

smsk_gatk_germline

Snakemake workflow to perform GATK's best practices for Germline SNP & Indel Discovery in Whole Genome and Exome Sequence
Python
1
star