Discover @colindaven Open Source projects

Colin Davenport (@colindaven)

colindaven

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awesome-pangenomes

A list of software for pangenomics

guppy_on_slurm

Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler

rs_demultiplex

Simple demultiplexing of FASTQ, one oligo (barcode) at a time

jbrowse2_utils

Bash scripts for writing assemblies and tracks to JBrowse2 https://jbrowse.org/jb2/

blacklister

Improve your metagenomic reference sequence: Simple adapter and contamination FASTA masking using bowtie2 and bedtools

wochenende_manuscript

Code accompanying the Wochenende metagenomics analyzer manuscript

rusty_samplesheet

Very simple Illumina SampleSheet validation in Rust. Make your biologists check their own custom SampleSheets! Can be compiled for Windows users.

nf-blast

Work in progress - nextflow blast.

singularity_scrna_app

READ ONLY A test environment for scrna_seq_apps

genometa

The shotgun metagenome analyzer genometa.

git_practice