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awesome-pangenomes
A list of software for pangenomicsguppy_on_slurm
Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job schedulerrs_demultiplex
Simple demultiplexing of FASTQ, one oligo (barcode) at a timejbrowse2_utils
Bash scripts for writing assemblies and tracks to JBrowse2 https://jbrowse.org/jb2/blacklister
Improve your metagenomic reference sequence: Simple adapter and contamination FASTA masking using bowtie2 and bedtoolswochenende_manuscript
Code accompanying the Wochenende metagenomics analyzer manuscriptrusty_samplesheet
Very simple Illumina SampleSheet validation in Rust. Make your biologists check their own custom SampleSheets! Can be compiled for Windows users.nf-blast
Work in progress - nextflow blast.singularity_scrna_app
READ ONLY A test environment for scrna_seq_appsgit_practice
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