ADPfusion
Efficient, high-level dynamic programmingBiobaseXNA
efficient encoding of short RNA and DNA sequencesPrimitiveArray
no-frills Haskell arraysFormalGrammars
Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)BiobaseInfernal
Haskell library to handle Infernal-related file formatsBiobaseFasta
streaming FASTA handling in HaskellRNAfold
ViennaRNA RNAfold using the ADPfusion libraryGenussFold
MCFGs for Genus-1 RNA PseudoknotsBiobaseTypes
BiobaseBlast
BLAST-related toolsLinguisticsTypes
flake-rPackages
experimental flake to repackage rPackagesForestStructures
Tree and forest structures in HaskellSciBaseTypes
Base types and classes for statistics, sciences and humanitiesOrderedBits
Order bits in a set by population countGrammarProducts
Products of linear and context-free grammarschoener.github.io
Homepage Uni JenaADPfusionSet
dynamic programming for set data structuresDPutils
utilities for DPoverlay-bioinformatics
nixos package overlays for bioinformatics toolsWordAlignment
Forestry
Science and craft of forestsViennaRNA-bindings
Bindings to the ViennaRNA package.BiobaseTurner
Turner 2004 energy parameter parserflowEMMi
automated model-based clustering of microbial dataghcicabal
Provides a ghci shell with options parsed from multiple cabal files, simplifying work on multiple packages concurrentlyBiobaseFR3D
Importer for FR3D resourcesBenchmarkHistory
Simple Haskell benchmarking system with historyAlignmentAlgorithms
overlay-python-packages
overlay with python packages for nixosCMCompare
Comparison of Infernal covariance modelsflake-aquadiva
Nix flake for aquadiva.uni-jena.deGene-CluEDO
Gene Cluster Evolution Determined OrderDiscretized
Newtypes to generalize discretized floating point numbersNaturalLanguageAlphabets
Alphabet and word encodings in natural languagesADPfusionForest
Dynamic programming on tree and forest structuresFeatureEngineering
Feature Engineering ExamplesBiobaseNewick
overlay-haskell-dev
haskell development related functionalityRNAdraw
overlay-haskell-packages
Overlay for modifications to existing Haskell packages (and potentially more)Nussinov78
Nussinov78 using the ADPfusion libraryBiobaseENA
European Nucleotide Archive dataflake-statistics
Flakes with a collection of statistical softwareViennaRNA-extras
ViennaRNA v2 extensions in HaskellInternedData
Internization for (mostly string) data typesBiobaseVienna
RNAfold energy tables and Turner 2004 converterbimaps
ADPfusionSubword
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