choener/BiobaseFR3D

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Language
Haskell
License
GNU General Publi...
Created over 12 years ago
Updated over 12 years ago

choener/BiobaseFR3D

choener

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Importer for FR3D resources

ADPfusion

Efficient, high-level dynamic programming

BiobaseXNA

efficient encoding of short RNA and DNA sequences

PrimitiveArray

no-frills Haskell arrays

FormalGrammars

Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)

BiobaseInfernal

Haskell library to handle Infernal-related file formats

BiobaseFasta

streaming FASTA handling in Haskell

RNAfold

ViennaRNA RNAfold using the ADPfusion library

GenussFold

MCFGs for Genus-1 RNA Pseudoknots

BiobaseTypes

BiobaseBlast

BLAST-related tools

LinguisticsTypes

flake-rPackages

experimental flake to repackage rPackages

ForestStructures

Tree and forest structures in Haskell

SciBaseTypes

Base types and classes for statistics, sciences and humanities

OrderedBits

Order bits in a set by population count

GrammarProducts

Products of linear and context-free grammars

choener.github.io

Homepage Uni Jena

ADPfusionSet

dynamic programming for set data structures

DPutils

utilities for DP

overlay-bioinformatics

nixos package overlays for bioinformatics tools

WordAlignment

Forestry

Science and craft of forests

ViennaRNA-bindings

Bindings to the ViennaRNA package.

BiobaseTurner

Turner 2004 energy parameter parser

flowEMMi

automated model-based clustering of microbial data

ghcicabal

Provides a ghci shell with options parsed from multiple cabal files, simplifying work on multiple packages concurrently

BenchmarkHistory

Simple Haskell benchmarking system with history

AlignmentAlgorithms

overlay-python-packages

overlay with python packages for nixos

flake-aquadiva

Nix flake for aquadiva.uni-jena.de

Gene-CluEDO

Gene Cluster Evolution Determined Order

Discretized

Newtypes to generalize discretized floating point numbers

NaturalLanguageAlphabets

Alphabet and word encodings in natural languages

ADPfusionForest

Dynamic programming on tree and forest structures

FeatureEngineering

Feature Engineering Examples

overlay-haskell-dev

haskell development related functionality

RNAdraw

overlay-haskell-packages

Overlay for modifications to existing Haskell packages (and potentially more)

Nussinov78

Nussinov78 using the ADPfusion library

BiobaseENA

European Nucleotide Archive data

flake-statistics

Flakes with a collection of statistical software

ViennaRNA-extras

ViennaRNA v2 extensions in Haskell

InternedData

Internization for (mostly string) data types

BiobaseVienna

RNAfold energy tables and Turner 2004 converter

CMCompare

Comparison of Infernal covariance models

bimaps

ADPfusionSubword

BiobaseNewick