Jonas Hartmann (@WhoIsJack)
github

WhoIsJack

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  • Stars
    star
    115
  • Global Rank 187,285 (Top 7 %)
  • Followers 42
  • Following 24
  • Registered about 9 years ago
  • Most used languages
    Jupyter Notebook
         87.5 %
    Python
         12.5 %
  • Location 🇩🇪 Germany
  • Country Total Rank 10,073
  • Country Ranking
    Jupyter Notebook
         221

Top repositories

1

python-bioimage-analysis-tutorial

A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
Jupyter Notebook
91
star
2

TrackTree

Nice visualization of timecourse data obtained from tracking dividing/splitting objects.
Jupyter Notebook
5
star
3

tissue_exploder

Create a nice exploded visualization of segmented cells in a tissue.
Python
5
star
4

data-driven-analysis-lateralline

This repository hosts the code for "An Image-Based Data-Driven Analysis of Cellular Architecture in a Developing Tissue" (Hartmann et al., 2020).
Jupyter Notebook
4
star
5

EMBL-CodingClub

This repo collects materials for the EMBL Coding Club.
Jupyter Notebook
3
star
6

katachi

WIP! A simplified python 3 port of the ISLA-CBE method for feature embedding of fluorescence microscopy images.
2
star
7

hackday-pybioimage

Repo for UCL Festival of Code Hackday python group working on modernizing and extending the python bioimage analysis tutorial.
Jupyter Notebook
2
star
8

cavity_expansion

This repo hosts the code for "Competence for neural crest induction is controlled by hydrostatic pressure through YAP" (Alasaadi et al., 2024).
Jupyter Notebook
2
star
9

chemokine_buffering_paper

Code for python-based quantitative image and data analysis in "Dynamic buffering of extracellular chemokine enables robust adaptation during directed tissue migration" by Wong and colleagues.
Jupyter Notebook
1
star