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python-bioimage-analysis-tutorial
A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.tissue_exploder
Create a nice exploded visualization of segmented cells in a tissue.data-driven-analysis-lateralline
This repository hosts the code for "An Image-Based Data-Driven Analysis of Cellular Architecture in a Developing Tissue" (Hartmann et al., 2020).EMBL-CodingClub
This repo collects materials for the EMBL Coding Club.katachi
WIP! A simplified python 3 port of the ISLA-CBE method for feature embedding of fluorescence microscopy images.hackday-pybioimage
Repo for UCL Festival of Code Hackday python group working on modernizing and extending the python bioimage analysis tutorial.cavity_expansion
This repo hosts the code for "Competence for neural crest induction is controlled by hydrostatic pressure through YAP" (Alasaadi et al., 2024).chemokine_buffering_paper
Code for python-based quantitative image and data analysis in "Dynamic buffering of extracellular chemokine enables robust adaptation during directed tissue migration" by Wong and colleagues.Love Open Source and this site? Check out how you can help us