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illumina2bam
Generate and process BAM files from Illumina sequencing instrument filesnpg_seq_pipeline
Processing and analysis of data coming from Illumina sequencing machinesbambi
Process Illumina instrument data into SAM/BAM/CRAM files.Percolate
A parallel workflow management application.npg_qc
QC checks and metrics for Illumina NGS datagenotyping
Components of the WTSI genotype analysis pipeline.npg_ranger
NGS data streaming (sam, bam, cram, vcf) - pre-productionperl-irods-wrap
Perl iRODS Client Wrapper LibraryGftools
A set of utilities to handle individual-level genotype data filesp4
Process and Pipe Pipeline Panaceagenotype-call
Explore the contents of Illumina's binary Genotype Call filesbcviz
JavaScript visualisation for bamcheck file formatnpg_tracking
WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) trackingnpg_docker
Prototypes of Docker-contained Pipelinesml_warehouse
Perl DBIx binding to a warehouse housing data from multiple LIM systemsIlluminus
A genotype calling algorithm for the Illumina BeadArray platformnpg_porch
irods-metadata
Description of a subset of metadata used in WTSI iRODSperl-dnap-utilities
WTSI DNA Pipelines Perl Utility Librarypb_calibration
Filter and calibration programs for Illumina BAM filessamtools-patches
patch files for various releases of samtoolsvalet
Automated data mangement for Oxford Nanopore DNA sequencing instrumentsnpg_irods
Tools for managing HTS (BAM and CRAM) format files in iRODS.npg_conda
NPG Conda recipes and toolssamtools_container
Scripts to create a docker container for samtoolspartisan
A Python client API for iRODSsimtools
Program to create and process SIM filesgit-pom-version
Updates the version of Maven pom files using "git describe"npg-irods-python
Applications for the management of data and metadata in iRODScontainers
Singularity and Docker materialnpg_qc_utils
C programs extracted from npg_qcLove Open Source and this site? Check out how you can help us