theosanderson/flowalign

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2
Language
Python
Created about 3 years ago
Updated over 1 year ago

theosanderson/flowalign

theosanderson

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Wrapper for minimap2 for alignment of viral sequences to reference

taxonium

A tool for exploring large trees in the browser

chronumental

Estimating time trees from very large phylogenies

Codon2Nucleotide

tube_checkout

Open-source hardware for tube handling and barcode scanning with OT2 robot

adhoc_covid

gensplore

Lightweight genome browser for microbial genomes

hospitalmedicines

mixology

Buffer making tool

deeperseq

Browse FASTQs for SARS-CoV-2 genomes from the SRA/ENA

PlasmoTron

Semi-automated culture of malaria parasites

covid_uk_data_timestamped

UK official COVID stats archived at various points in time, allowing reporting date and specimen date to be linked.

Advanced_OT2

Jupyter Notebook

armadillin

malaria_phenotype_papers

Using a GPT3-based classifier to identify malaria papers reporting phenotypes

mpxTree

add_biosample_metadata_to_fastqdl_json

Adds biosample metadata from ENA to fastq-dl downloads

cov2tree

Cov2Tree website, based on Taxodium

OpenRoboticIncubator

An open-source hardware robotic incubator.

genomium

A portal for a set of microbial sequence tools

mov_streamlit

OpentronsTerminalCalibration

Lightweight python script to calibrate position of equipment in an OpenTrons OT1 robot, rather than relying on the GUI app

molnupiravir

Jupyter Notebook

SARS-CoV-2-mutations-of-interest

sgtf-downsampling

OTWebControl

genbank_api