theosanderson/gensplore theosanderson/gensplore

  • Stars
    star
    8
  • Rank 2,099,232 (Top 42 %)
  • Language
    JavaScript
  • Created almost 2 years ago
  • Updated 10 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
theosanderson/gensplore
github

theosanderson

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Lightweight genome browser for microbial genomes

More Repositories

1

taxonium

A tool for exploring large trees in the browser
JavaScript
99
star
2

chronumental

Estimating time trees from very large phylogenies
Python
24
star
3

Codon2Nucleotide

JavaScript
10
star
4

tube_checkout

Open-source hardware for tube handling and barcode scanning with OT2 robot
9
star
5

adhoc_covid

HTML
8
star
6

hospitalmedicines

JavaScript
8
star
7

mixology

Buffer making tool
HTML
7
star
8

deeperseq

Browse FASTQs for SARS-CoV-2 genomes from the SRA/ENA
JavaScript
6
star
9

PlasmoTron

Semi-automated culture of malaria parasites
Python
4
star
10

covid_uk_data_timestamped

UK official COVID stats archived at various points in time, allowing reporting date and specimen date to be linked.
3
star
11

Advanced_OT2

Jupyter Notebook
3
star
12

armadillin

Python
3
star
13

malaria_phenotype_papers

Using a GPT3-based classifier to identify malaria papers reporting phenotypes
Python
2
star
14

flowalign

Wrapper for minimap2 for alignment of viral sequences to reference
Python
2
star
15

mpxTree

Shell
2
star
16

add_biosample_metadata_to_fastqdl_json

Adds biosample metadata from ENA to fastq-dl downloads
Python
2
star
17

cov2tree

Cov2Tree website, based on Taxodium
HTML
2
star
18

OpenRoboticIncubator

An open-source hardware robotic incubator.
OpenSCAD
2
star
19

genomium

A portal for a set of microbial sequence tools
JavaScript
2
star
20

mov_streamlit

Python
1
star
21

OpentronsTerminalCalibration

Lightweight python script to calibrate position of equipment in an OpenTrons OT1 robot, rather than relying on the GUI app
Python
1
star
22

molnupiravir

Jupyter Notebook
1
star
23

SARS-CoV-2-mutations-of-interest

1
star
24

sgtf-downsampling

1
star
25

OTWebControl

Python
1
star
26

genbank_api

CSS
1
star