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goatools
Python library to handle Gene Ontology (GO) termsjcvi
Python library to facilitate genome assembly, annotation, and comparative genomicsbio-pipeline
My collection of light bioinformatics analysis pipelines for specific tasksallhic
Genome scaffolding based on HiC data in heterozygous and high ploidy genomesquota-alignment
Guided synteny alignment between duplicated genomes (within specified quota constraint)treecut
Find nodes in hierarchical clustering that are statistically significantmcscan
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column formatrust-wfa2
Rust binding for WFA2-libklassify
Classify chimeric reads based on unique kmer contentsjcvi-bin
Collection of third-party softwares used in jcvi librarydna-pygments
Javascript code to highlight features in biological sequencesSplithunter
Identify split reads in given chromosomal regionspositional-history
Internal scripts to run the pipeline to determine the transpositions of A. thaliana genes with respect to multiple outgroupspybind11_log
A bridge from C++ to Python loggingpgdd
Dynamic contents within the plant genome duplication databasedotfiles
bashrc, vimrc, gitconfig and various other configuration filesnannou-playground
Animation projects that leverage the excellent nannou librarytanghaibao
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