tanghaibao/pgdd

This repository has been archived on 25/Nov/2019
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Python
Created over 14 years ago
Updated over 13 years ago

tanghaibao/pgdd

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Dynamic contents within the plant genome duplication database

goatools

Python library to handle Gene Ontology (GO) terms

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

bio-pipeline

My collection of light bioinformatics analysis pipelines for specific tasks

allhic

Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

Jupyter Notebook

quota-alignment

Guided synteny alignment between duplicated genomes (within specified quota constraint)

treecut

Find nodes in hierarchical clustering that are statistically significant

mcscan

Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

trimReads

Utility programs to trim or sort Illumina reads with adapter sequences

rust-wfa2

Rust binding for WFA2-lib

jcvi-bin

Collection of third-party softwares used in jcvi library

dna-pygments

Javascript code to highlight features in biological sequences

Splithunter

Identify split reads in given chromosomal regions

positional-history

Internal scripts to run the pipeline to determine the transpositions of A. thaliana genes with respect to multiple outgroups

dotfiles

bashrc, vimrc, gitconfig and various other configuration files

pybind11_log

A bridge from C++ to Python logging

nannou-playground

Animation projects that leverage the excellent nannou library

tanghaibao