Discover tanghaibao/positional-history Open Source project

This repository has been archived on 25/Nov/2019
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Internal scripts to run the pipeline to determine the transpositions of A. thaliana genes with respect to multiple outgroups

goatools

Python library to handle Gene Ontology (GO) terms

Python

753

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

Python

735

bio-pipeline

My collection of light bioinformatics analysis pipelines for specific tasks

CAP CDS

allhic

Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

Jupyter Notebook

quota-alignment

Guided synteny alignment between duplicated genomes (within specified quota constraint)

Python

treecut

Find nodes in hierarchical clustering that are statistically significant

Python

mcscan

Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

C++

trimReads

Utility programs to trim or sort Illumina reads with adapter sequences

C++

rust-wfa2

Rust binding for WFA2-lib

Rust

jcvi-bin

Collection of third-party softwares used in jcvi library

Java

dna-pygments

Javascript code to highlight features in biological sequences

JavaScript

Splithunter

Identify split reads in given chromosomal regions

C++

pgdd

Dynamic contents within the plant genome duplication database

Python

dotfiles

bashrc, vimrc, gitconfig and various other configuration files

C++

pybind11_log

A bridge from C++ to Python logging

C++

nannou-playground

Animation projects that leverage the excellent nannou library

Rust

tanghaibao

tanghaibao/positional-history

tanghaibao

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