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tidyHeatmap
Draw heatmap simply using a tidy data frametidybulk
Brings bulk and pseudobulk transcriptomics to the tidyversetidyseurat
Seurat meets tidyverse. The best of both worlds.CuratedAtlasQueryR
Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.sccomp
Testing differences in cell type proportions from single-cell data.tidySingleCellExperiment
Brings SingleCellExperiment objects to the tidyversenanny
A tidyverse suite for (pre-) machine-learning: cluster, PCA, permute, impute, rotate, redundancy, triangular, smart-subset, abundant and variable features.bioc_2020_tidytranscriptomics
Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmaptidySummarizedExperiment
Brings SummarizedExperiment to the tidyversetidygate
Label elements within user drawn gatesrpharma2020_tidytranscriptomics
ppcseq
Probabilistic outlier identification for bulk RNA sequencing databioceurope2020_tidytranscriptomics
rladiestunis2021_tidytranscriptomics
biocasia2020_tidytranscriptomics
ABACBS2020_tidytranscriptomics
tidysc
[Not ready for third party use] A modular framework and a tidy data structure for bulk transcriptional analyses.bioc2021_tidytranscriptomics
single_cell_outliers
RNAseq-noise-model
singh_et_al_taurine_bone
ARMET
Algorithms for Resolving Microenvironment TranscriptomesHPCell
Massively scalable R-native HPC-compatible pipeline for single-cell data analysiscellsig
reducing-cost-spatial
Reduce the cost burden of spatial transcriptomics through topology subsamplingLove Open Source and this site? Check out how you can help us