Discover stemangiola/reducing-cost-spatial Open Source project

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stemangiola

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Reduce the cost burden of spatial transcriptomics through topology subsampling

tidyHeatmap

Draw heatmap simply using a tidy data frame

292

tidybulk

Brings bulk and pseudobulk transcriptomics to the tidyverse

164

tidyseurat

Seurat meets tidyverse. The best of both worlds.

155

CuratedAtlasQueryR

Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.

sccomp

Testing differences in cell type proportions from single-cell data.

tidySingleCellExperiment

Brings SingleCellExperiment objects to the tidyverse

nanny

A tidyverse suite for (pre-) machine-learning: cluster, PCA, permute, impute, rotate, redundancy, triangular, smart-subset, abundant and variable features.

bioc_2020_tidytranscriptomics

Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap

tidySummarizedExperiment

Brings SummarizedExperiment to the tidyverse

tidygate

Label elements within user drawn gates

rpharma2020_tidytranscriptomics

ppcseq

Probabilistic outlier identification for bulk RNA sequencing data

bioceurope2020_tidytranscriptomics

rladiestunis2021_tidytranscriptomics

biocasia2020_tidytranscriptomics

ABACBS2020_tidytranscriptomics

tidysc

[Not ready for third party use] A modular framework and a tidy data structure for bulk transcriptional analyses.

bioc2021_tidytranscriptomics

Dockerfile

single_cell_outliers

RNAseq-noise-model

zhejiang2020

singh_et_al_taurine_bone

ARMET

Algorithms for Resolving Microenvironment Transcriptomes

HPCell

Massively scalable R-native HPC-compatible pipeline for single-cell data analysis

cellsig

stemangiola/reducing-cost-spatial

stemangiola

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