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hck
A sharp cut(1) clone.crabz
Like pigz, but rustgzp
Multi-threaded Compressionperbase
Per-base per-nucleotide depth analysiscargo-bundle-licenses
Generate a THIRDPARTY file with all licenses in a cargo project.rust-lapper
Rust implementation of a fast, easy, interval tree library nim-lappernython
Build Python Extension Modules for Nim libraries.ponim
Nim + Python + Poetry = :)rumi
Rust UMI Directional Adjacency Deduplicatorripline
Fast by-line reader from ripgrepbam-builder
Wrapper over rust-htslib for building collections of BAM records for testing.bioinfo_benchmarks
Language benchmarks that are important for Bioinformatics scriptingExtraMojo
A library of nice to have things not found in the current mojo stdlibproglog
Simple, thread-safe, counter based progress logginglapper.cr
Crystal port of nim-lapper: a fast genomic intervals query librarytimfmt
A small utility for formatting things the way Tim prefers.nimedlib
Nim wrapper for the Edlib libraryreadfq
A packaged version of readfq implementation for reading fastq and fastq formatted files.ScAIList
Rust implementation of an Augmented Interval List, with a scaling factor.dot
data over timeesc
Small CLI for escaping and unescaping characters in stringsinterval_bakeoff
Test tool for different interval librariesscivs
Collection of Data Structures for working with genomic intervalsny_lapper
Python wrapper around nim-lapper using nython. Currently just a POCivtools
Rust lib for genomic interval tools.aoc-2023
basebits
A memory efficient encoding for short DNA sequences and some associated operations.mash
Mash files togethercleanse
Small tool to clean up delimited data to make it consumable by standard unix toolsIntervalLapper.jl
Julia implementation of nim-lapper, a fast and easy interval library tailored for genomic data.aoc-lisp-rs
A Lisp to use for Advent of Code, written in RustLove Open Source and this site? Check out how you can help us