Seth (@sstadick)
github

sstadick

Twitter logo Share LinkedIn logo Share Facebook logo Share

Top repositories

1

hck

A sharp cut(1) clone.
Rust
691
star
2

crabz

Like pigz, but rust
Rust
325
star
3

gzp

Multi-threaded Compression
Rust
156
star
4

perbase

Per-base per-nucleotide depth analysis
Rust
114
star
5

cargo-bundle-licenses

Generate a THIRDPARTY file with all licenses in a cargo project.
Rust
86
star
6

rust-lapper

Rust implementation of a fast, easy, interval tree library nim-lapper
Rust
55
star
7

nython

Build Python Extension Modules for Nim libraries.
Python
52
star
8

ponim

Nim + Python + Poetry = :)
Python
32
star
9

rumi

Rust UMI Directional Adjacency Deduplicator
Rust
14
star
10

ripline

Fast by-line reader from ripgrep
Rust
12
star
11

bam-builder

Wrapper over rust-htslib for building collections of BAM records for testing.
Rust
11
star
12

bioinfo_benchmarks

Language benchmarks that are important for Bioinformatics scripting
Nim
6
star
13

ExtraMojo

A library of nice to have things not found in the current mojo stdlib
Mojo
6
star
14

proglog

Simple, thread-safe, counter based progress logging
Rust
5
star
15

lapper.cr

Crystal port of nim-lapper: a fast genomic intervals query library
Crystal
5
star
16

timfmt

A small utility for formatting things the way Tim prefers.
Rust
4
star
17

nimedlib

Nim wrapper for the Edlib library
Nim
4
star
18

readfq

A packaged version of readfq implementation for reading fastq and fastq formatted files.
Go
3
star
19

ScAIList

Rust implementation of an Augmented Interval List, with a scaling factor.
Rust
2
star
20

dot

data over time
Rust
2
star
21

esc

Small CLI for escaping and unescaping characters in strings
Rust
2
star
22

interval_bakeoff

Test tool for different interval libraries
Rust
2
star
23

scivs

Collection of Data Structures for working with genomic intervals
Scala
2
star
24

ny_lapper

Python wrapper around nim-lapper using nython. Currently just a POC
Nim
1
star
25

ivtools

Rust lib for genomic interval tools.
Rust
1
star
26

aoc-2023

Rust
1
star
27

basebits

A memory efficient encoding for short DNA sequences and some associated operations.
Rust
1
star
28

we-bt

Rust
1
star
29

mash

Mash files together
Rust
1
star
30

cleanse

Small tool to clean up delimited data to make it consumable by standard unix tools
Rust
1
star
31

IntervalLapper.jl

Julia implementation of nim-lapper, a fast and easy interval library tailored for genomic data.
Julia
1
star
32

aoc-lisp-rs

A Lisp to use for Advent of Code, written in Rust
1
star