sstadick/aoc-lisp-rs

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Created 11 months ago
Updated 11 months ago

sstadick/aoc-lisp-rs

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A Lisp to use for Advent of Code, written in Rust

hck

A sharp cut(1) clone.

crabz

Like pigz, but rust

gzp

Multi-threaded Compression

perbase

Per-base per-nucleotide depth analysis

cargo-bundle-licenses

Generate a THIRDPARTY file with all licenses in a cargo project.

rust-lapper

Rust implementation of a fast, easy, interval tree library nim-lapper

nython

Build Python Extension Modules for Nim libraries.

ponim

Nim + Python + Poetry = :)

rumi

Rust UMI Directional Adjacency Deduplicator

ripline

Fast by-line reader from ripgrep

bam-builder

Wrapper over rust-htslib for building collections of BAM records for testing.

bioinfo_benchmarks

Language benchmarks that are important for Bioinformatics scripting

ExtraMojo

A library of nice to have things not found in the current mojo stdlib

proglog

Simple, thread-safe, counter based progress logging

lapper.cr

Crystal port of nim-lapper: a fast genomic intervals query library

timfmt

A small utility for formatting things the way Tim prefers.

nimedlib

Nim wrapper for the Edlib library

readfq

A packaged version of readfq implementation for reading fastq and fastq formatted files.

ScAIList

Rust implementation of an Augmented Interval List, with a scaling factor.

dot

esc

Small CLI for escaping and unescaping characters in strings

interval_bakeoff

Test tool for different interval libraries

scivs

Collection of Data Structures for working with genomic intervals

ny_lapper

Python wrapper around nim-lapper using nython. Currently just a POC

ivtools

Rust lib for genomic interval tools.

aoc-2023

basebits

A memory efficient encoding for short DNA sequences and some associated operations.

we-bt

mash

Mash files together

cleanse

Small tool to clean up delimited data to make it consumable by standard unix tools

IntervalLapper.jl

Julia implementation of nim-lapper, a fast and easy interval library tailored for genomic data.