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genomescope
Fast genome analysis from unassembled short readsappliedgenomics2017
JHU EN.600.649: Computational Genomics: Applied Comparative Genomicsappliedgenomics2021
Materials for Spring 2021 Applied Genomics Coursecrossstitch
Code for phasing SVs with SNPspseudohaploid
Create a pseudohaploid assembly from a partially resolved diploid assemblyappliedgenomics2023
Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomicsappliedgenomics2022
Materials for EN.601.449/EN.601.649 Computational Genomics: Applied Comparative Genomicsappliedgenomics2019
Materials for Spring 2019 Applied Genomics Courset2t-variants
scikit-ribo
Accurate estimation and robust modelling of translation dynamics at codon resolutiondatastructures2018
Materials for JHU Data Structures 2018appliedgenomics2020
Description Materials for Spring 2020 Applied Genomics Coursebiomedicalresearch2021
Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical ResearchCol-CEN
Resources for the Col-CEN reference genome assembliest2t-chm13-chry
presentations
Presentations from the schatzlab - http://schatz-lab.org/presentations/PodPlot
Plot coverage or percent of total sequence as a function of minimum read lengthteachingarchive
Archive of teaching materialsbiomedicalresearch2017
EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical ResearchLongTron
schatzlab.github.io
Source materials for schatzlab.github.ioanvil
asm_model
Statistical Modeling and Prediction of Genome Assembly Qualityscikit-ribo_manuscript
Reproducing the analysis in the scikit-ribo manuscript using iPython notebooksLove Open Source and this site? Check out how you can help us