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schatzlab

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Top repositories

1

genomescope

Fast genome analysis from unassembled short reads
JavaScript
212
star
2

appliedgenomics2018

Materials for Spring 2018 Applied Genomics Course
Jupyter Notebook
71
star
3

appliedgenomics2017

JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
HTML
54
star
4

appliedgenomics2021

Materials for Spring 2021 Applied Genomics Course
52
star
5

crossstitch

Code for phasing SVs with SNPs
Java
50
star
6

pseudohaploid

Create a pseudohaploid assembly from a partially resolved diploid assembly
Perl
30
star
7

appliedgenomics2023

Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics
HTML
27
star
8

appliedgenomics2022

Materials for EN.601.449/EN.601.649 Computational Genomics: Applied Comparative Genomics
Jupyter Notebook
23
star
9

appliedgenomics2019

Materials for Spring 2019 Applied Genomics Course
21
star
10

t2t-variants

Papyrus
20
star
11

scikit-ribo

Accurate estimation and robust modelling of translation dynamics at codon resolution
Python
18
star
12

datastructures2018

Materials for JHU Data Structures 2018
Java
17
star
13

appliedgenomics2020

Description Materials for Spring 2020 Applied Genomics Course
Jupyter Notebook
16
star
14

biomedicalresearch2021

Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research
13
star
15

Col-CEN

Resources for the Col-CEN reference genome assemblies
10
star
16

t2t-chm13-chry

Jupyter Notebook
9
star
17

presentations

Presentations from the schatzlab - http://schatz-lab.org/presentations/
HTML
7
star
18

PodPlot

Plot coverage or percent of total sequence as a function of minimum read length
Python
5
star
19

teachingarchive

Archive of teaching materials
Jupyter Notebook
4
star
20

biomedicalresearch2017

EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research
Jupyter Notebook
3
star
21

LongTron

Shell
2
star
22

schatzlab.github.io

Source materials for schatzlab.github.io
HTML
2
star
23

anvil

1
star
24

asm_model

Statistical Modeling and Prediction of Genome Assembly Quality
Shell
1
star
25

scikit-ribo_manuscript

Reproducing the analysis in the scikit-ribo manuscript using iPython notebooks
Jupyter Notebook
1
star