ryanneph/PyMedImage

Stars
13
Rank 1,504,369 (Top 30 %)
Language
Python
Created over 7 years ago
Updated about 5 years ago

ryanneph/PyMedImage

ryanneph

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Medical image handling library for easy manipulation of dicom images in research

ChanVese_Levelset_Segmentation

Reference implementation of Chan-Vese Level Set segmentation for 2D grayscale images

VideoStabilizer

Offline optimization-based video stabilization

Raytrace

General purpose python ray tracing library implemented in on GPU in CUDA as a Cython extension

BNPSeg

Bayesian Non-Parametric Image Segmentation using HDP-MRF

RTTypes

Library for handling common data formats seen in Radiation Therapy

Jai-Code-Interop

Basic examples of code interop between Jai <—> C/C++ <—> nasm (x86-64)

geant4-boilerplate

Boilerplate code for performing radiation dose calculation in Geant4

npy2dcm

Simple boilerplate for generating a series of DICOM images from a numpy array

PyViz

Simple python+matplotlib gui viewer for 3d volumetric data in multiple orientations supporting many of the file formats I tend to use in research projects

TF-MultiGPU

Simple example of how to setup multi-GPU (tower-based) model training in TensorFlow 1.x

CT3Dto2D

Utility for converting a CT volume from a single 3D dicom file to the standard set of 2D dicom slice files

GPU-Usage-Logger

Usage logging for Nvidia GPUs

Advent-of-Code

My hand-crafted gourmet solutions to the Advent of Code challenge.

SmallSOCC

SMALL animal irradiation Sparse Orthogonal Collimator Controller - software for precise radiation delivery in small animal tumor studies