• Stars
    star
    35
  • Rank 750,836 (Top 15 %)
  • Language
    MATLAB
  • License
    MIT License
  • Created about 9 years ago
  • Updated over 5 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).

More Repositories

1

GLMspiketraintutorial

Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data
MATLAB
91
star
2

neuroGLM

Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
MATLAB
67
star
3

GLMspiketraintutorial_python

Jupyter Notebook
46
star
4

LNPfitting

Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood
MATLAB
19
star
5

PYMentropy

Discrete entropy estimator using the Pitman-Yor mixture (PYM) prior
MATLAB
18
star
6

BinaryPursuitSpikeSorting

Detect synchronous and overlapped spikes in extracellular recordings using Binary Pursuit (Pillow et al 2013)
MATLAB
13
star
7

psytrack_learning

Extension of Psytrack to include learning
Jupyter Notebook
10
star
8

fastASD

Fast inference for high-D receptive fields using Automatic Smoothness Determination (ASD)
MATLAB
10
star
9

CDMentropy

Centered Dirichlet Mixture entropy estimator for binary data
MATLAB
9
star
10

adaptivePsychophysicsToolbox

For effective analysis and optimal experiment design for psychophysics experiments
MATLAB
9
star
11

StepRampMCMC

Cuda
6
star
12

gaudy-images

Code for "High-contrast 'gaudy' images improve the training of deep neural network models of visual cortex" by Cowley and Pillow, NeurIPS 2020.
Python
6
star
13

activelearningTCs

MATLAB
5
star
14

PoissonBalancedNets

Implementation of Balanced Spiking Networks with Poisson Neurons, from Rullan & Pillow 2019.
MATLAB
5
star
15

iSTAC

information-theoretic Spike-Triggered Average and Covariance (iSTAC) estimator for receptive fields
MATLAB
5
star
16

adaptiveOptimalTraining

adaptive optimal training of animal behavior
MATLAB
4
star
17

mTDRdemo

Self-contained code to demonstrate how to use mTDR.
MATLAB
4
star
18

GQM

Fitting routines for moment-based estimation of a Generalized Quadratic Model (GQM)
MATLAB
2
star
19

VLR-STRF

variational low rank estimation for spatiotemporal receptive fields
MATLAB
2
star
20

multilinearRegression

MATLAB
2
star
21

GaussHermiteQuadrature

Gauss-Hermite Quadrature (for approximating integrals w.r.t. a Gaussian density)
MATLAB
2
star
22

CBEM

conductance-based encoding model
MATLAB
2
star
23

DRD

DRD model described in Wu et.al, 2014
MATLAB
1
star
24

invBlockTriDiag

Efficiently compute central and off-diagonal blocks of the inverse of a block-tridiagonal matrix
MATLAB
1
star
25

raisedCosineBasis

makes raised cosine basis with log scaling of x axis
MATLAB
1
star
26

neu314data

Datasets for "Mathematical Tools for Neuroscience" (NEU 314)
1
star