olgatsiouri1996/CpG_island_identificator_julia olgatsiouri1996/CpG_island_identificator_julia

  • Stars
    star
    1
  • Language
    Julia
  • License
    MIT License
  • Created over 2 years ago
  • Updated over 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
olgatsiouri1996/CpG_island_identificator_julia
github

olgatsiouri1996

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

CpG island identification using the Gardiner-Garden and Frommer (1987) method that exports the results in a txt file containing the id, start, end, strand, gc content and obs/exp ratio

More Repositories

1

biomisc_R

command line bioinformatic scripts written in R
R
22
star
2

biomisc

collection of miscellaneous command line bioinformatic scripts
Python
7
star
3

bioinfo_gui_scripts

python scripts that can be easily trasformed to gui programs for wet lab scientists to use
Python
3
star
4

protein_physicochemical_properties_calculator

ProtParam based program that outputs the id, pI, charge and molecular weight of each protein
Python
2
star
5

CpG_island_identificator

CpG island identification pipeline inspired by the Gardiner-Garden and Frommer (1987) method
Python
1
star
6

siRNA-mapped-to-Niben-length-distribution

R
1
star
7

codon_optimize_cds_with_many_taxids_singlefasta

Linux GUI app to codon optimize many single-fasta files with coding sequences , using many taxonomy ids
Python
1
star
8

biomisc_julia

collection of miscellaneous command line bioinformatic scripts written in julia for speed
Julia
1
star
9

pdbs_secondary_structure_statistics

Linux GUI Program to calculate the percentage of each secondary structure for each input pdb file in a user specified directory
Python
1
star
10

pdb_viewer_binder

binder to visualize structures from pdb files
Jupyter Notebook
1
star
11

tm_calculator_gui

Calculates the melting temperature(in Celsius) of a user imported forward and reverse primer based on primer blast default parameters & pcr additives
Python
1
star
12

df2fasta

R Function that Converts Dataframe to FASTA
R
1
star
13

trigonometric_and_logarithmic_calculator

calculates basic trigonometric, logarithmic and exponential with Euler's number as base values, using user input
C++
1
star