olgatsiouri1996/biomisc

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Language
Python
License
MIT License
Created about 4 years ago
Updated 12 months ago

olgatsiouri1996/biomisc

olgatsiouri1996

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collection of miscellaneous command line bioinformatic scripts

biomisc_R

command line bioinformatic scripts written in R

bioinfo_gui_scripts

python scripts that can be easily trasformed to gui programs for wet lab scientists to use

protein_physicochemical_properties_calculator

ProtParam based program that outputs the id, pI, charge and molecular weight of each protein

CpG_island_identificator

CpG island identification pipeline inspired by the Gardiner-Garden and Frommer (1987) method

siRNA-mapped-to-Niben-length-distribution

codon_optimize_cds_with_many_taxids_singlefasta

Linux GUI app to codon optimize many single-fasta files with coding sequences , using many taxonomy ids

biomisc_julia

collection of miscellaneous command line bioinformatic scripts written in julia for speed

pdbs_secondary_structure_statistics

Linux GUI Program to calculate the percentage of each secondary structure for each input pdb file in a user specified directory

pdb_viewer_binder

binder to visualize structures from pdb files

Jupyter Notebook

CpG_island_identificator_julia

CpG island identification using the Gardiner-Garden and Frommer (1987) method that exports the results in a txt file containing the id, start, end, strand, gc content and obs/exp ratio

tm_calculator_gui

Calculates the melting temperature(in Celsius) of a user imported forward and reverse primer based on primer blast default parameters & pcr additives

df2fasta

R Function that Converts Dataframe to FASTA

trigonometric_and_logarithmic_calculator

calculates basic trigonometric, logarithmic and exponential with Euler's number as base values, using user input